PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 4.2.1.20 as complete word(s)

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Found 25 characterized proteins with matching descriptions. 5 of these are heteromeric.

Fetched 25 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 25 of these sequences

Found 3 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 388-506 amino acids (3/14 heteromeric)

O28672 tryptophan synthase (EC 4.2.1.20) from Archaeoglobus fulgidus
PFams: PALP
397 amino acids: PaperBLAST, CDD, Compare to cluster

b1261 tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli K-12 substr. MG1655
P0A879 tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli (strain K12)
P0A879 tryptophan synthase (EC 4.2.1.20) from Escherichia coli
PFams: PALP
397 amino acids: PaperBLAST, CDD, Compare to cluster

P14671 tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana
P14671 tryptophan synthase (EC 4.2.1.20) from Arabidopsis thaliana
PFams: PALP
470 amino acids: PaperBLAST, CDD, Compare to cluster

P50909 β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
P50909 tryptophan synthase (EC 4.2.1.20) from Thermotoga maritima
PFams: PALP
389 amino acids: PaperBLAST, CDD, Compare to cluster

Q5JDJ1 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: PALP
Heteromeric, 442 amino acids: PaperBLAST, CDD, Compare to cluster

Q60142 tryptophan synthase (EC 4.2.1.20) from Bacillus subtilis
PFams: PALP
400 amino acids: PaperBLAST, CDD, Compare to cluster

Q8U093 tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Pyrococcus furiosus
PFams: PALP
Heteromeric, 388 amino acids: PaperBLAST, CDD, Compare to cluster

Q97TX6 tryptophan synthase (EC 4.2.1.20) from Saccharolobus solfataricus
PFams: PALP
429 amino acids: PaperBLAST, CDD, Compare to cluster

Q9FFW8 tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana
Q9FFW8 tryptophan synthase (EC 4.2.1.20) from Arabidopsis thaliana
PFams: PALP
506 amino acids: PaperBLAST, CDD, Compare to cluster

RF|YP_045379.1 tryptophan synthase, beta subunit; EC 4.2.1.20 from Acinetobacter calcoaceticus
PFams: PALP
403 amino acids: PaperBLAST, CDD, Compare to cluster

GI|28971664 tryptophan synthase, beta subunit; EC 4.2.1.20 from Burkholderia multivorans ATCC 17616
PFams: PALP
417 amino acids: PaperBLAST, CDD, Compare to cluster

TRPB_SALTY / P0A2K1 Tryptophan synthase beta chain; EC 4.2.1.20 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PDB|1KFJ_B tryptophan synthase beta chain; EC 4.2.1.20 from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: PALP
397 amino acids: PaperBLAST, CDD, Compare to cluster

TRPB_RHIEC / Q2KE82 Tryptophan synthase beta chain; EC 4.2.1.20 from Rhizobium etli (strain CFN 42 / ATCC 51251)
PFams: PALP
406 amino acids: PaperBLAST, CDD, Compare to cluster

Q9YGB0 tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9YGB0 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: PALP
Heteromeric, 389 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 248-347 amino acids (2/9 heteromeric)

TRPA1_ARATH / O22765 Tryptophan synthase alpha chain; Indole synthase; Indole-3-glycerol-phosphate lyase; EC 4.2.1.20; EC 4.1.2.8 from Arabidopsis thaliana (Mouse-ear cress)
O22765 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Arabidopsis thaliana
PFams: Trp_syntA, His_biosynth
275 amino acids: PaperBLAST, CDD, Compare to cluster

P00929 tryptophan synthase (EC 4.2.1.20) from Salmonella enterica subsp. enterica serovar Typhimurium
PDB|1QOQ_A tryptophan synthase alpha chain; EC 4.2.1.20 from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Trp_syntA
268 amino acids: PaperBLAST, CDD, Compare to cluster

b1260 tryptophan synthase subunit α (EC 4.1.2.8; EC 4.2.1.20) from Escherichia coli K-12 substr. MG1655
P0A877 tryptophan synthase subunit α (EC 4.1.2.8) from Escherichia coli (strain K12)
P0A877 tryptophan synthase (EC 4.2.1.20) from Escherichia coli
PFams: Trp_syntA
268 amino acids: PaperBLAST, CDD, Compare to cluster

P42390 indole-3-glycerol phosphate lyase (EC 4.1.2.8) from Zea mays
TRPA_MAIZE / P42390 Indole-3-glycerol phosphate lyase, chloroplastic; Benzoxazineless 1; Indole synthase; Tryptophan synthase alpha chain; EC 4.1.2.8; EC 4.2.1.20 from Zea mays (Maize)
P42390 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Zea mays
PFams: Trp_syntA, His_biosynth
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q659I8 tryptophan synthase (EC 4.2.1.20) from Isatis tinctoria
PFams: Trp_syntA, His_biosynth
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8U094 tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Pyrococcus furiosus
PFams: Trp_syntA, His_biosynth
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster

TRPA_HALVD / P18284 Tryptophan synthase alpha chain; EC 4.2.1.20 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
PFams: Trp_syntA
277 amino acids: PaperBLAST, CDD, Compare to cluster

TRPA2_ARATH / Q42529 Tryptophan synthase alpha chain, chloroplastic; Indole-3-glycerol-phosphate lyase, chloroplastic; Protein TRYPTOPHAN-REQUIRING 3; EC 4.2.1.20; EC 4.1.2.8 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Trp_syntA, His_biosynth
312 amino acids: PaperBLAST, CDD, Compare to cluster

Q9YGA9 tryptophan synthase subunit α (EC 4.1.2.8) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9YGA9 tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: Trp_syntA, Ribul_P_3_epim, His_biosynth
Heteromeric, 251 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 700-707 amino acids (not heteromeric)

A0A2U8JPY3 tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis
PFams: Trp_syntA, PALP
700 amino acids: PaperBLAST, CDD, Compare to cluster

TRP_YEAST / P00931 Tryptophan synthase; EC 4.2.1.20 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: Trp_syntA, PALP
707 amino acids: PaperBLAST, CDD, Compare to cluster